Topic Title Expert Institute Link Year
  NIDDK Resources 2020 Cindy Roy NIDDK Link 2020

 

Hematopoiesis          
Mouse Hematopoiesis Unraveling the effects of prenatal inflammation on developmental hematopoiesis Anna Beaudin, PhD* University of Utah School of Medicine Link 2022
Mouse Hematopoiesis Lineages, clones and function in the hematopoietic system Fernando Camargo, PhD Harvard/Boston Childrens Link 2021
Mouse Hematopoiesis Functional screens in hematopoiesis Jun Lu, PhD* Yale School of Medicine Link 2021
Mouse Hematopoiesis The single cell characterization and procurement core at CCHMC: a 3D view of the hematopoietic system Marie-Dominique Filippi, PhD Cincinnati Childrens Hospital Link 2021
Xenotransplantation Humanized Mouse Humanized Mouse Models for the Study of Hematopoiesis in Health and Disease Stephanie Halene, MD, PhD Yale School of Medicine Link 2022
Erythroblastic Island The role of EKLF/KLF1 in the erythroblastic island niche during mouse development James Bieker, PhD Mount Sinai School of Medicine Link 2023
Stress-stem cells Hematopoietic stem cell differentiation under stress Daisuke Nakada, PhD Baylor College of Medicine Link 2023
Regeneration Polarity dependent mechanisms of hematopoietic regeneration Jose Cancelas Perez, MD, PhD Cincinnati Childrens Hospital Link 2021
Mouse Hematopoiesis Immune development Anna Beaudin, PhD University of Utah School of Medicine Link 2020
Human Erythropoiesis Normal and Disordered Human Erythropoiesis Mohandas Narla, MD New York Blood Center Link 2022
Human Hematopoiesis What human genetic variation can teach us about hematopoiesis Vijay Sankaran, MD, PhD Harvard/Boston Childrens Link 2022
Sickle Cell Macrophage metabolic rewiring improves heme-suppressed efferocytosis and tissue damage in sickle cell disease Francesca Vinchi, PhD* New York Blood Center Link 2023
Erythroid Metabolomics Metabolomics of the erythrocyte James Cox, PhD. University of Utah School of Medicine Link  
Hemoglobinopathies Hemoglobinopathies, challenges and therapeutic approaches Stefano Rivella, PhD Childrens Hospital of Philadelphia Link 2022
Congenital Sideroblastic Congenital sideroblastic anemia: iron and heme lost in (mitochondrial translation) Mark D Fleming, MD, Dphil Boston Children’s Hospital Link 2021
Transcriptional regulation Cis-regulatory clues reveal new mechanism promoting cellular regeneration in anemia Kyle Hewitt, PhD* University of Nebraska Medical Center Link 2023
Canine Hematopoiesis Canine models for hemtopoietic disease and transplantation Brian Hayes, PhD Fred Hutchinson Cancer Research Center Link 2023
Mouse Hematopoiesis Myeloid lineage specification mechanisms at the top of the hematopoiesis Hierarchy Yoona Kang Yoona Kang Washington University in St. Louis Link 2024
Mouse Hematopoiesis Transcriptional regulation of mesodermal lineage canalization Dean Tantin University of Utah School of Medicine Link 2024
    * CCEH Funded      

 

Iron Metabolism          
Fe-S clusters Biogenesis of iron-sulfur proteins in eukaryotes: mitochondria, mitosomes, mechanisms and maladies Roland Lill, PhD University of Marburg Link 2022
Iron homeostasis The role of prodomains in regulating BMP2, BMP6 and Bmp2/6 ligand activity to maintain iron homeostasis Jan Christian, PhD* University of Utah School of Medicine Link 2021
Iron homeostasis New insights into hepcidin regulation and systemic iron homeostasis Jodie Babitt, MD* Harvard/Mass General Hosp Link 2022
Ion Channel A role of mechanosensitive ion channel PIEZO1 in iron metabolism Shang Ma, PhD Scripps Institute Link 2021
ZIP14 ZIP14 (SLC39A14) as a potential therapeutic target in the treatment of iron overload Mitch Knutson, PhD University of Florida Link 2021
Macrophages in adipose tissue Macrophages as ferrostats in adipose tissue Alyssa Hasty, PhD Vanderbilt University Link 2021
Lysosomes and Iron Understanding how cells cope with lysosome-mediated iron deficiency Adam Hughes, PhD* University of Utah School of Medicine Link 2022
Iron deficiency COPD Iron deficiency in the alveolar epithelium: implications for chronic respiratory disease Suzanne Cloonan, PhD Trinity College Link 2022
Parasite Iron homeostasis Fifty shades of iron: adaptive organelle metabolism in malaria parasites Paul Sigala, PhD* University of Utah School of Medicine Link 2022
Metabolic insights Metabolic insights into iron homeostasis Yatrik Shah, PhD University of Michigan Link 2023
Fe-S biogenesis in Parasites Divergent Acyl carrier protein mediates mitochondrial Fe-S cluster biosynthesis in malaria parasites Seyi Falekun, graduate student University of Utah School of Medicine Link 2021
Cytosolic Iron Chaperone Mischief Managed: chaperoning iron in the cytosol Caroline Philpott, MD NIDDK, Genetics and Metabolism Section Link 2020
Kidney Iron Iron, Cystitis, Pyelonephritis Jonathan Barasch, MD Columbia University Link 2020
Erythroferrone Erythropoiesis regulates hepcidin Tomas Ganz, MD UCLA Link 2020
Diabetes Diabetes and iron: Can’t live with it, can’t live without it Don McClain, MD, PhD Wake Forest University Link 2020
Pregnancy and Iron Iron pathobiology in pregnancy Ella Nemeth, PhD UCLA Link 2020
Mouse Hematopoiesis Role of iron sulfur proteins in mammalian cells and viral infections Tracey Rouault NICHD, NIH Link 2024
    * CCEH Funded      

 

Heme metabolism          
Porphyria Murine models for studies of porphyrias and hepatic heme homeostatic mechanisms Makiko Yasuda, MD, PhD* Mount Sinai School of Medicine   2022
Erythroid protoporphyria Factors modifying the severity of erythroid protoporphyria Sarah Ducamp, PhD* Boston Children’s Hospital Link 2022
Iron and Heme Iron and Heme core update Hector Bergonia, MS University of Utah School of Medicine Link 2021
Heme trafficking Illuminating heme trafficking and signaling in health and disease Amit Reddi, PhD* Georgia Tech Link 2022
Heme biosynthesis Heme biosynthesis and distribution: complexity and intersections Amy Medlock, PhD* University of Georgia Link 2022
Iron and Heme Core Iron and Heme Core facilitates research into heme biosynthesis and iron metabolism Laurie Jackson, PhD University of Utah School of Medicine Link 2021
Iron and Heme Core Iron and Heme Core facilitates research into heme biosynthesis and iron metabolism Laurie Jackson, PhD University of Utah School of Medicine Link 2020
Mitochondrial heme Regulation of mitochondrial heme metabolism in erythroid cells Yvette Yien, PhD University of Delaware/Pittsburg Link 2021
Heme Trafficking Heme trafficking, use and toxicity during red cell differentiation Jan Abkowitz, MD University of Washington Link 2021
Heme trafficking Identification of an intracellular heme trafficking protein Caiyong Chen, PhD Zhejiang University Link 2023
    * CCEH Funded      

 

Mutagenesis          
CRISPR in mice Advanced services for the rapid and precise generation of genetically modified mice using CRISPR technology Crystal Davey, PhD University of Utah School of Medicine Link 2023
Mutation Generation Detection Mutation Generation and Detection Core Services Crystal Davey, PhD University of Utah School of Medicine Link 2020

 

Microscopy          
Foundations of Microscopy Optical foundations of taking high quality images with your microscope Joerg Bewersdorf, PhD Yale School of Medicine Link 2022
Intravital Microscopy Intravital Microscopy Kenn Dunn, PhD Indiana University School of Medicine Link 2022
Confocal Microscopy Introduction to Confocal Microscopy Joerg Bewersdorf, PhD Yale School of Medicine Link 2022
CODEX Microscopy CODEX multiplexed tissue cytometry Kenn Dunn, PhD Indiana University School of Medicine Link  
Super Resolution Microscopy Super-resolution microscopy and its biomedical application Joerg Bewersdorf, PhD Yale School of Medicine Link 2022
Cell Cycle Microscopy Reading live cell cycle speed by fluorescence microscopy Shangqin Guo, PhD* Yale School of Medicine Link 2022
Imaging – Hematopoiesis Applying Codex technology for the examination of architectural relationships in the hematopoietic niche Edward Srour, PhD Indiana University School of Medicine Link 2021
3D Visualization – Imaris An introduction into 3D visualization with Imaris software package Marie-Dominique Filippi, PhD Cincinnati Childrens Hospital Link 2023
Long term imaging Long term live cell imaging Shangqin Guo, PhD* Yale School of Medicine Link 2023
    Vanessa Scanlon, PhD UConn Health School of Dental Medicine    
Light Sheet Microscopy Light Sheet microscopy Kenn Dunn, PhD Indiana University School of Medicine Link 2023
Bone marrow imaging Bone marrow imagine and hematopoietic cell mapping Daniel Lucas, PhD Cincinnati Childrens Hospital Link 2023
    * CCEH Funded      

 

Flow Cytometry          
Basics Flow cytometry basics and applications Pratibha Singh, PhD Indiana University School of Medicine Link 2023
Panel Design The art of Flow cytometry panel design and compensation Pratibha Singh, PhD Indiana University School of Medicine Link 2023
Sample Prep Flow cytometry sample preparation and staining Pratibha Singh, PhD Indiana University School of Medicine Link 2023
Flow in Hematology Multiparameter Flow Cytometry in hematology and immunology Annie Song, PhD Cincinnati Childrens Hospital Link 2023
Acquisition and Analysis Flow cytometry sample acquisition and data analysis Pratibha Singh, PhD Indiana University School of Medicine Link 2023
Flow staining and sorting Enriching Rare Populations of Human CD34 Cells by FACS Vanessa Scanlon, PhD Uconn/Yale School of Medicine Link 2023

 

Metabolism          
Protein Metabolite Interactions MIDAS core update Kevin Hicks, PhD University of Utah School of Medicine Link 2021
Metabolomics Metabolomics core update James Cox, PhD University of Utah School of Medicine Link 2021
Protein Metabolite Updates Technological innovations of the protein-metabolite discovery core: membrane protein targeting and endogenous metabolome screening Kevin Hicks, PhD University of Utah School of Medicine Link 2023
Metabolomics Metabolomics at the University of Utah James Cox, PhD University of Utah School of Medicine Link 2022
Lipidomics Lipidomics at the University of Utah James Cox, PhD University of Utah School of Medicine Link 2022
Metabolomics Metabolomics for the Nonmalignant Hematology Researcher James Cox, PhD University of Utah School of Medicine Link 2024

 

Data analysis          
Large Data set analysis ToppCell: A versatile data portal for exploring single cell datasets and the genomic biology of cells and tissues Bruce Aronow, PhD Cincinnati Childrens Hospital Link 2021

 

Enrichment          
Enrichment Education Enriching the future Beverly Torok-Storb, PhD Fred Hutchinson Cancer Research Center Link 2022
Honoring Hal Broxmeyer Honoring Hal Broxmeyer: His past, present and future contributions to the field of experimental hematology Maegan Capitano, PhD Indiana University School of Medicine Link 2022
Giants in Iron Utah CIHD Interviews with giants in iron Harry Dailey University of Georgia Link 2024
Giants in Iron Utah CIHD Interviews with giants in iron Nancy Andrews Boston Children’s Hospital Link 2024
Giants in Iron Utah CIHD Interviews with giants in iron Roland Lill University of Marburg Link 2024
Giants in Iron Utah CIHD Interviews with giants in iron Jerry Kaplan University of Utah Link 2024
Giants in Iron Utah CIHD Interviews with giants in iron Tom Ganz University of California, Los Angeles Link 2024

 

Single Cell Data Analysis          
Part 1 Analysis and Interpretation of single cells sequencing data – part 1 Introduction and alignment Toma Tebaldi PhD Yale School of Medicine Link  
Part 2 Analysis and Interpretation of single cells sequencing data – part 2 Toma Tebaldi PhD Yale School of Medicine Link  
Part 3 Analysis and Interpretation of single cells sequencing data – part 3 Key Analysis Steps Toma Tebaldi PhD Yale School of Medicine Link  
Part 4 Analysis and Interpretation of single cells sequencing data – part 4 Multiple Test Correction Toma Tebaldi PhD Yale School of Medicine Link  
TopicTitleExpertInstituteYearLink
NIDDK Resources 2020Cindy RoyNIDDK2020
TopicTitleExpertInstituteYearLink
Mouse HematopoiesisUnraveling the effects of prenatal inflammation on developmental hematopoiesis
*
Anna Beaudin, PhDUniversity of Utah School of Medicine2022
Mouse HematopoiesisLineages, clones and function in the hematopoietic systemFernando Camargo, PhDHarvard/Boston Childrens2021
Mouse HematopoiesisFunctional screens in hematopoiesis
*
Jun Lu, PhDYale School of Medicine2021
Mouse HematopoiesisThe single cell characterization and procurement core at CCHMC: a 3D view of the hematopoietic systemMarie-Dominique Filippi, PhDCincinnati Childrens Hospital2021
Xenotransplantation Humanized MouseHumanized Mouse Models for the Study of Hematopoiesis in Health and DiseaseStephanie Halene, MD, PhDYale School of Medicine2022
Erythroblastic IslandThe role of EKLF/KLF1 in the erythroblastic island niche during mouse developmentJames Bieker, PhDMount Sinai School of Medicine2023
Stress-stem CellsHematopoietic stem cell differentiation under stressDaisuke Nakada, PhDBaylor College of Medicine2023
RegenerationPolarity dependent mechanisms of hematopoietic regenerationJose Cancelas Perez, MD, PhDCincinnati Childrens Hospital2021
Mouse HematopoiesisImmune developmentAnna Beaudin, PhD University of Utah School of Medicine2020
Human ErythropoiesisNormal and Disordered Human ErythropoiesisMohandas Narla, MDNew York Blood Center2022
Human HematopoiesisWhat human genetic variation can teach us about hematopoiesisVijay Sankaran, MD, PhDHarvard/Boston Childrens2022
Sickle CellMacrophage metabolic rewiring improves heme-suppressed efferocytosis and tissue damage in sickle cell disease
*
Francesca Vinchi, PhDNew York Blood Center2023
Erythroid MetabolomicsMetabolomics of the erythrocyteJames Cox, PhDUniversity of Utah School of Medicine
HemoglobinopathiesHemoglobinopathies, challenges and therapeutic approachesStefano Rivella, PhDChildrens Hospital of Philadelphia2022
Congenital SideroblasticCongenital sideroblastic anemia: iron and heme lost in (mitochondrial translation)Mark D Fleming, MD, DphilBoston Children’s Hospital2021
Transcriptional RegulationCis-regulatory clues reveal new mechanism promoting cellular regeneration in anemia
*
Kyle Hewitt, PhDUniversity of Nebraska Medical Center2023
Canine HematopoiesisCanine models for hemtopoietic disease and transplantationBrian Hayes, PhDFred Hutchinson Cancer Research Center2023
Mouse HematopoiesisMyeloid lineage specification mechanisms at the top of the hematopoiesis Hierarchy Yoona KangYoona KangWashington University in St. Louis2024
Mouse HematopoiesisTranscriptional regulation of mesodermal lineage canalizationDean TantinUniversity of Utah School of Medicine2024
TopicTitleExpertInstituteYearLink
Fe-S ClustersBiogenesis of iron-sulfur proteins in eukaryotes: mitochondria, mitosomes, mechanisms and maladiesRoland Lill, PhDUniversity of Marburg2022
Iron HomeostasisThe role of prodomains in regulating BMP2, BMP6 and Bmp2/6 ligand activity to maintain iron homeostasis
*
Jan Christian, PhDUniversity of Utah School of Medicine2021
Iron HomeostasisNew insights into hepcidin regulation and systemic iron homeostasis
*
Jodie Babitt, MDHarvard/Mass General Hosp2022
Ion ChannelA role of mechanosensitive ion channel PIEZO1 in iron metabolismShang Ma, PhDScripps Institute2021
ZIP14ZIP14 (SLC39A14) as a potential therapeutic target in the treatment of iron overloadMitch Knutson, PhDUniversity of Florida2021
Macrophages in Adipose TissueMacrophages as ferrostats in adipose tissueAlyssa Hasty, PhDVanderbilt University2021
Lysosomes and IronUnderstanding how cells cope with lysosome-mediated iron deficiency
*
Adam Hughes, PhDUniversity of Utah School of Medicine2022
Iron Deficiency COPDIron deficiency in the alveolar epithelium: implications for chronic respiratory diseaseSuzanne Cloonan, PhDTrinity College2022
Parasite Iron HomeostasisFifty shades of iron: adaptive organelle metabolism in malaria parasites
*
Paul Sigala, PhDUniversity of Utah School of Medicine2022
Metabolic InsightsMetabolic insights into iron homeostasisYatrik Shah, PhDUniversity of Michigan2023
Fe-S Biogenesis in ParasitesDivergent Acyl carrier protein mediates mitochondrial Fe-S cluster biosynthesis in malaria parasitesSeyi Falekun, graduate studentUniversity of Utah School of Medicine2021
Cytosolic Iron ChaperoneMischief Managed: chaperoning iron in the cytosolCaroline Philpott, MDNIDDK, Genetics and Metabolism Section2020
Kidney IronIron, Cystitis, PyelonephritisJonathan Barasch, MDColumbia University2020
ErythroferroneErythropoiesis regulates hepcidinTomas Ganz, MDUCLA2020
DiabetesDiabetes and iron: Can’t live with it, can’t live without itDon McClain, MD, PhDWake Forest University2020
Pregnancy and IronIron pathobiology in pregnancyElla Nemeth, PhDUCLA2020
Mouse HematopoiesisRole of iron sulfur proteins in mammalian cells and viral infectionsTracey RouaultNICHD, NIH2024
TopicTitleExpertInstituteYearLink
PorphyriaMurine models for studies of porphyrias and hepatic heme homeostatic mechanisms
*
Makiko Yasuda, MD, PhDMount Sinai School of Medicine2022
Erythroid ProtoporphyriaFactors modifying the severity of erythroid protoporphyria
*
Sarah Ducamp, PhDBoston Children’s Hospital2022
Iron and HemeIron and Heme core updateHector Bergonia, MSUniversity of Utah School of Medicine2021
Heme TraffickingIlluminating heme trafficking and signaling in health and diseaseAmit Reddi, PhDGeorgia Tech2022
Heme BiosynthesisHeme biosynthesis and distribution: complexity and intersections
*
Amy Medlock, PhDUniversity of Georgia2022
Iron and HemeIron and Heme Core facilitates research into heme biosynthesis and iron metabolismLaurie Jackson, PhDUniversity of Utah School of Medicine2021
Iron and HemeIron and Heme Core facilitates research into heme biosynthesis and iron metabolismLaurie Jackson, PhDUniversity of Utah School of Medicine2020
Mitochondrial HemeRegulation of mitochondrial heme metabolism in erythroid cellsYvette Yien, PhDUniversity of Delaware/Pittsburg2021
Heme TraffickingHeme trafficking, use and toxicity during red cell differentiationJan Abkowitz, MDUniversity of Washington2021
Heme TraffickingIdentification of an intracellular heme trafficking proteinCaiyong Chen, PhDZhejiang University2023
TopicTitleExpertInstituteYearLink
CRISPR in MiceAdvanced services for the rapid and precise generation of genetically modified mice using CRISPR technologyCrystal Davey, PhDUniversity of Utah School of Medicine2023
Mutation Generation DetectionMutation Generation and Detection Core ServicesCrystal Davey, PhDUniversity of Utah School of Medicine2020
TopicTitleExpertInstituteYearLink
Foundations of MicroscopyOptical foundations of taking high quality images with your microscopeJoerg Bewersdorf, PhD Yale School of Medicine2022
Intravital MicroscopyIntravital MicroscopyKenn Dunn, PhDIndiana University School of Medicine2022
Confocal MicroscopyIntroduction to Confocal MicroscopyJoerg Bewersdorf, PhDYale School of Medicine2022
CODEX MicroscopyCODEX multiplexed tissue cytometryKenn Dunn, PhDIndiana University School of Medicine
Super Resolution MicroscopySuper-resolution microscopy and its biomedical applicationJoerg Bewersdorf, PhDYale School of Medicine2022
Cell Cycle MicroscopyReading live cell cycle speed by fluorescence microscopy
*
Shangqin Guo, PhDYale School of Medicine2022
Imaging – HematopoiesisApplying Codex technology for the examination of architectural relationships in the hematopoietic nicheEdward Srour, PhDIndiana University School of Medicine2021
3D Visualization – ImarisAn introduction into 3D visualization with Imaris software packageMarie-Dominique Filippi, PhDCincinnati Childrens Hospital2023
Long term imagingLong term live cell imaging
*
Shangqin Guo, PhDYale School of Medicine2023
MicroscopyVanessa Scanlon, PhDUConn Health School of Dental Medicine
Light Sheet MicroscopyLight Sheet MicroscopyKenn Dunn, PhDIndiana University School of Medicine2023
Bone Marrow ImagingBone marrow imagine and hematopoietic cell mappingDaniel Lucas, PhDCincinnati Childrens Hospital2023
TopicTitleExpertInstituteYearLink
BasicsFlow cytometry basics and applicationsPratibha Singh, PhDIndiana University School of Medicine2023
Panel DesignThe art of Flow cytometry panel design and compensationPratibha Singh, PhDIndiana University School of Medicine2023
Sample PrepFlow cytometry sample preparation and stainingPratibha Singh, PhDIndiana University School of Medicine2023
Flow in HematologyMultiparameter Flow Cytometry in hematology and immunologyAnnie Song, PhDCincinnati Childrens Hospital2023
Acquisition and AnalysisFlow cytometry sample acquisition and data analysisPratibha Singh, PhDIndiana University School of Medicine2023
Flow Staining and SortingEnriching Rare Populations of Human CD34 Cells by FACSVanessa Scanlon, PhDUconn/Yale School of Medicine2023
TopicTitleExpertInstituteYearLink
Protein Metabolite InteractionsMIDAS core updateKevin Hicks, PhDUniversity of Utah School of Medicine2021
MetabolomicsMetabolomics core updateJames Cox, PhDUniversity of Utah School of Medicine2021
Protein Metabolite UpdatesTechnological innovations of the protein-metabolite discovery core: membrane protein targeting and endogenous metabolome screeningKevin Hicks, PhDUniversity of Utah School of Medicine2023
MetabolomicsMetabolomics at the University of UtahJames Cox, PhDUniversity of Utah School of Medicine2022
LipidomicsLipidomics at the University of UtahJames Cox, PhDUniversity of Utah School of Medicine2022
MetabolomicsMetabolomics for the Nonmalignant Hematology ResearcherJames Cox, PhDUniversity of Utah School of Medicine2024
TopicTitleExpertInstituteYearLink
Large Data Set AnalysisToppCell: A versatile data portal for exploring single cell datasets and the genomic biology of cells and tissuesBruce Aronow, PhDCincinnati Childrens Hospital2021
TopicTitleExpertInstituteYearLink
Enrichment EducationEnriching the futureBeverly Torok-Storb, PhDFred Hutchinson Cancer Research Center2022
Honoring Hal BroxmeyerHonoring Hal Broxmeyer: His past, present and future contributions to the field of experimental hematologyMaegan Capitano, PhDIndiana University School of Medicine2022
Giants in IronUtah CIHD Interviews with giants in ironHarry DaileyUniversity of Georgia2024
Giants in IronUtah CIHD Interviews with giants in ironNancy AndrewsBoston Children’s Hospital2024
Giants in IronUtah CIHD Interviews with giants in ironRoland LillUniversity of Marburg2024
Giants in IronUtah CIHD Interviews with giants in ironJerry KaplanUniversity of Utah2024
Giants in IronUtah CIHD Interviews with giants in ironTom GanzUniversity of California, Los Angeles2024
TopicTitleExpertInstituteYearLink
Part 1Analysis and Interpretation of single cells sequencing data – part 1 Introduction and alignmentToma Tebaldi, PhDYale School of Medicine
Part 2Analysis and Interpretation of single cells sequencing data – part 2Toma Tebaldi, PhDYale School of Medicine
Part 3Analysis and Interpretation of single cells sequencing data – part 3 Key Analysis StepsToma Tebaldi, PhDYale School of Medicine
Part 4Analysis and Interpretation of single cells sequencing data – part 4 Multiple Test CorrectionToma Tebaldi, PhDYale School of Medicine